PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_167.15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family FAR1
Protein Properties Length: 670aa    MW: 77598.7 Da    PI: 8.5471
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_167.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.48.5e-2285168189
                          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkl 81 
                                   ++Yn YAkevGF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++ +w++ ++
  evm.model.supercontig_167.15  85 NYYNCYAKEVGFRVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RIRKETRTGCPAMIRMRLVDSRRWRILEV 160
                                   69*****************************************9988.....999************************** PP

                          FAR1  82 eleHnHel 89 
                                    leHnH l
  evm.model.supercontig_167.15 161 TLEHNHLL 168
                                   ******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.4E-1985168IPR004330FAR1 DNA binding domain
PfamPF105512.0E-28287381IPR018289MULE transposase domain
PROSITE profilePS509669.668551587IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6562589IPR006564Zinc finger, PMZ-type
PfamPF044340.0013563583IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MVFHTEIEDA ALSSEQVPYG ECLLQMEEAP VSSEQTSDGE CNESLRERNG EIAVLEGKND  60
LVEEKKEFVA PAVGMEFESY DDAYNYYNCY AKEVGFRVRV KNSWFKRNSK EKYGAVLCCS  120
SQGFKRIKDV NRIRKETRTG CPAMIRMRLV DSRRWRILEV TLEHNHLLGN KIYKSIKKMS  180
TGTRRKSKSS SDSEVQKIKL YRALVIDAGG NGNLNSDKRE VRNFSHHPSQ LNLKRGDSQA  240
IYNYFCRMQL TNPNFIYLVD FNDEGHLRNI FWLDARSRAS CGYFGDIIYI DNTYLSCKYE  300
IPLVTFVGIN HHGQSVLLGC GLLAGETTES YIWLFKAWLK CVSGSFPQTI ITDRCKTLQS  360
AITEVFHRSL HRYSLSHIMK KIPEKLGGLR NYDAIRKALI KAIYDTLKVI EFEAAWGFIV  420
QHFGVGDHEW LQSLYEDRAQ WAPVYLKDTV FAGISALRLG EVLGPFFDKY VHKQTPLKEF  480
LDKYELALQK KHKEETLADI ESRNSSPTLK TRCSFELQLS KVYTRDLFKK FPVRVKERVL  540
GEANRREVRD FEVLYNRTAA EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPPKYILPRW  600
KKDYKRVYIP DKGSSHVDAI DYVQWFNQLY RSALQIVEEG VTSLDHYKVA LQAFMESLNR  660
VHDVEQKQE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073140.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A067KLC90.0A0A067KLC9_JATCU; Uncharacterized protein
STRINGVIT_09s0002g07400.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6